PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009563-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 275aa    MW: 30299.4 Da    PI: 9.7947
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009563-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.8e-143680147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
    NNU_009563-RA 36 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 80
                     789*****************77.*********.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-173086IPR009057Homeodomain-like
PROSITE profilePS5129416.2913185IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-73486IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-193483IPR006447Myb domain, plants
SMARTSM007171.1E-113583IPR001005SANT/Myb domain
PfamPF002496.3E-123680IPR001005SANT/Myb domain
CDDcd001671.82E-93881No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0032922Biological Processcircadian regulation of gene expression
GO:0043966Biological Processhistone H3 acetylation
GO:0046686Biological Processresponse to cadmium ion
GO:0048573Biological Processphotoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MNVNSTSSNS QSMAASTPLD ASGKKVRKPY TITKSRESWT EEEHDKFLEA LQLFDRDWKK  60
IEDFVGSKTV IQIRSHAQKY FLKVQKNGTV AHVPPPRPKR KAAYPYPQKA SKNALLPLQA  120
SMAYPSTLNC VAPGYSPWDD KSVLTTDVGS KGVARTGNSN FSGIGSSSRA LPSCDIQGKR  180
GSLLHGIPDF AEVYSFIGSV FDPDTKGHLQ KLKEMDPINF ETVLLLMRNL TVNLSSPDFE  240
PIKKILSSYD VNMKMVGRAS GGAATNQDND LHPYL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00338DAPTransfer from AT3G09600Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260150.10.0PREDICTED: protein REVEILLE 8 isoform X1
SwissprotQ8RWU31e-124RVE8_ARATH; Protein REVEILLE 8
TrEMBLB5TV641e-151B5TV64_CAMSI; MYB transcription factor
STRINGGLYMA10G05560.11e-144(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-105MYB_related family protein